PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910716.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 198aa    MW: 21355.8 Da    PI: 5.331
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910716.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-171867255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr +k +grWv+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  XP_010910716.1 18 RYRGVRKRK-WGRWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAAVVCLRG 67
                    7*****999.**********933...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.25E-271877No hitNo description
Gene3DG3DSA:3.30.730.103.0E-291877IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-201876IPR016177DNA-binding domain
PfamPF008477.2E-101867IPR001471AP2/ERF domain
PROSITE profilePS5103222.7611875IPR001471AP2/ERF domain
SMARTSM003802.9E-331881IPR001471AP2/ERF domain
PRINTSPR003679.7E-101930IPR001471AP2/ERF domain
PRINTSPR003679.7E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002213Biological Processdefense response to insect
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MMRTECASGT SAAAGERRYR GVRKRKWGRW VSEIRLPNSR ERIWLGSYDS AEKAARAFDA  60
AVVCLRGRRG RLNFPNSPPR IAGGQSLSPR QIQALAARHA HKDNSDAATT AADVVAPVMS  120
SSEASDAPTT ESEEVLDWSF MDILSSPDVV GMDFPTAAAA MDDFSYDFFA PSMAAAPPDV  180
AEENGGVGFG GNSFLWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-14977574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00601PBMTransfer from AT1G74930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910716.11e-143ethylene-responsive transcription factor ERF017
SwissprotQ9S7L54e-39ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A2H3XIK21e-102A0A2H3XIK2_PHODC; ethylene-responsive transcription factor ERF017
STRINGXP_008784342.11e-103(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]