PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010910542.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 355aa    MW: 36801.4 Da    PI: 5.6327
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010910542.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1172.4e-36641777106
             TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa............seceaesssssasnsssg. 88 
                     r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a+pai+++tg+++++a            s           +++s++ 
  XP_010910542.1  64 RTRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGSGTIPAiattvdgtlkipS-----------EAPSAAg 147
                     899********************************************************888883322222222221...........2111112 PP

             TCP  89 ............kaaksaakskksqksaas 106
                                 + ak  +k +++++ a+s
  XP_010910542.1 148 sttsvgdvkregSTAKRPKKLQPTRAAANS 177
                     222233443322333333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.81665119IPR017887Transcription factor TCP subgroup
PfamPF036344.1E-3065158IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDSKKQEKGD DEDGQRTDLR MAGGGRGGGS GGAATPVHHR LIVPKPEPME FMGALSILRR  60
PAGRTRDRHT KVEGRGRRIR MPAACAARIF QLTRELGHKS DGETIRWLLQ HAEPAIIAAT  120
GSGTIPAIAT TVDGTLKIPS EAPSAAGSTT SVGDVKREGS TAKRPKKLQP TRAAANSSSG  180
VSAAHYPIVA DPLVHSGGAI SISSGLAPIA AAGPAAPPGL VPMCAVGNTV WGRVIPPGAL  240
WMLPPSSAVA AGPSNQQPQI WTFPSPPHII NLVGARAIPT VFPGGVPGLN LATAAEVHPV  300
PFADGKPGDD GASASPLQLM EESADQEAAE EEQRQLPEEE EEEEEELLSE SSPED
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910542.10.0transcription factor PCF2
SwissprotA2YXQ17e-76PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH67e-76PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A2H3ZF640.0A0A2H3ZF64_PHODC; transcription factor PCF2-like
STRINGXP_008812846.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-41TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]