PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909787.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 534aa    MW: 58983.3 Da    PI: 6.3611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909787.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2219e-07293314223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  XP_010909787.1 293 FCTICGKGFKRDANLRMHMRGH 314
                     6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-5290318No hitNo description
SMARTSM003550.0026292314IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03292319IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5293329IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280294314IPR007087Zinc finger, C2H2
SMARTSM0035571341374IPR015880Zinc finger, C2H2-like
SMARTSM0035527379401IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDPKLRRTSE SAAKSCAQMM GDRSRNFNLG QPFIQCNPTN LCYGGKHEQT FPEFPSALDT  60
ETQSLYQPEH EVKSINQFKP SPNVNNAILD WDPRLVLSNL SFLEQKIHQV QDIVRSIINQ  120
EGQFSNRANE MVAQRQLVTA DLTSIIIQLI STAGSLLPSM KNTLVSTNPS VGQVGSIVGA  180
RTSFGINGSQ QQNEVIHMEV PKASAYDDLI EGFNNRGNEG SELIKGLNAQ GNEGDELMKC  240
LKSCEGEGTE SIPVEDHEVK DCDDGADGEN LPPGSYEVLQ LEKEEILAPH THFCTICGKG  300
FKRDANLRMH MRGHGDEYKT AAALAKPHKE STSEPALIKR YSCPFVGCKR NKEHKKFQPL  360
KTILCVKNHY KRSHCDKSFT CSRCNTKKFS VIADLKTHEK HCGRDKWLCS CGTTFSRKDK  420
LFGHVALFQG HTPVLAVDEA NVSGISDQVQ GNEVINGMVG SMDYNFASST LDDVQILNIK  480
GVDDGRGCFS PMNFDACNFG GLDEFPRPAF EVSESSFSFL CSGSSNFIQR SGDN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909786.10.0zinc finger protein STOP1 homolog
RefseqXP_029117888.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2H3YA460.0A0A2H3YA46_PHODC; zinc finger protein STOP1 homolog isoform X1
STRINGXP_008795575.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-171C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]