PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909781.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26999.1 Da    PI: 7.7575
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909781.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.41e-241058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    rien   rqvtf+kRr+g+lKKA+ELSvL+da++ +iifs++gklye +
  XP_010909781.1 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLTDADIGIIIFSTHGKLYELA 58
                    8*********************************************965 PP

2K-box48.53.7e-17851631187
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGe..dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                      + +es +qe++ Lk+ei+ Lq+ +R + G+    ++++l+eL+ Le++Le    ++R++K+++++++i+ l++k  ++
  XP_010909781.1  85 IQAQESFKQEISVLKQEINILQKCLRYMSGDmgASDNMTLEELHALERHLEIWTYHVRATKMQVMFQEIQSLKNKVVRH 163
                     456799**********************998334578*************************************98665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.553161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-27177IPR002100Transcription factor, MADS-box
CDDcd002651.56E-38279No hitNo description
PRINTSPR004045.3E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-253859IPR002100Transcription factor, MADS-box
PfamPF014863.5E-1887160IPR002487Transcription factor, K-box
PROSITE profilePS5129711.4388180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRAGLLK KAKELSVLTD ADIGIIIFST HGKLYELATR  60
GTMEGLIERY RKTSGEAQTE GGEVIQAQES FKQEISVLKQ EINILQKCLR YMSGDMGASD  120
NMTLEELHAL ERHLEIWTYH VRATKMQVMF QEIQSLKNKV VRHLLQFYFF QTKIVEQNGH  180
FDVAPMMVQQ NGHFGVSPMI VQQNEHFTAA PAMEDIPYPL TIQNDYSSFT SLDMG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788359.11e-138MADS-box transcription factor 26-like
SwissprotA2YQK92e-85MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G82e-85MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A2H3XT111e-137A0A2H3XT11_PHODC; MADS-box transcription factor 26-like
STRINGXP_008788359.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-57AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]