PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909496.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 156aa    MW: 16692.8 Da    PI: 7.0544
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909496.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-053557123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+++F ++  L  H++ H
  XP_010909496.1 35 FPCTYCSRRFFTSQALGGHQNAH 57
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-63362No hitNo description
Gene3DG3DSA:3.30.160.609.0E-43361IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.3E-63459IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3443562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAEPSNRYYD FLKPPAAEEP TAAAVGRPPE ALRTFPCTYC SRRFFTSQAL GGHQNAHKKE  60
RAAGSRKAPA SSPSSSSTVV TTDTAILHHP GLPPRPSPSF PWFEPPPPPQ PYFYVYGPPP  120
PSPPPMSAPL ASATEVSSFA SAPADLDLDL DLSLHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909496.11e-106zinc finger protein KNUCKLES-like
TrEMBLA0A2H3YMW37e-52A0A2H3YMW3_PHODC; zinc finger protein KNUCKLES-like
STRINGXP_008801133.11e-52(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-14C2H2 family protein