PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909354.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GeBP
Protein Properties Length: 469aa    MW: 49758.1 Da    PI: 4.3866
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909354.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573104.77.2e-33167266297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 
                     lfqrlw++e ei++LqG+++f++++g+   +++ d+  fye +kk+++++++k+ql+eK+rrLKkK+++ v++ ++ gk+++f+++h+++i++++
  XP_010909354.1 167 LFQRLWTDEEEITILQGFLEFTSRRGTtfASHQyDTGPFYEEIKKRLQLEFTKNQLIEKLRRLKKKYRNVVSRmRSMGKDFAFRSSHEKDIYDIA 261
                     79************************99877778**************************************97889****************** PP

          DUF573  93 kkiWg 97 
                     + iW 
  XP_010909354.1 262 RNIWS 266
                     ****6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-30168266IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MPSAEDEEER AFFDDDDDDD DMEGDDSEEE EEEDYEDDDA EAVQPPAFAG VAVAAAPPLL  60
AKPAEEGLNG TTPSTSSSDR AAPNANPPSN PNPNPATAAD PGFAPQNGAI PILPLSAAAP  120
STPAATAAGG LCTPSSSDPV TQPYEDRKPF PVAVAAVGGG YDDSRRLFQR LWTDEEEITI  180
LQGFLEFTSR RGTTFASHQY DTGPFYEEIK KRLQLEFTKN QLIEKLRRLK KKYRNVVSRM  240
RSMGKDFAFR SSHEKDIYDI ARNIWSANVK RARDSDDDDL NTPNNAYAIE AVSAPDGAMN  300
SDRRMSRSRR RFRRRTAEAA TATAASASPA TVGVPVGNSV PVTQVPSSSA AAAIPGIIEE  360
TVKSCLSPLF KELIYSATGG PLGPGLSGGA GLLGLGPGPG PGLGGGAAAL SPIPFCLGGS  420
PASLPGSGAA VDEKWKKQQI LELEVYLKRI ELLQDQIKST LEELKSSGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909354.30.0probable transcription factor At3g04930
RefseqXP_029118106.10.0probable transcription factor At3g04930
RefseqXP_029118108.10.0probable transcription factor At3g04930
TrEMBLA0A2H3YLJ51e-176A0A2H3YLJ5_PHODC; probable transcription factor At3g04930
STRINGXP_008800322.11e-177(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.19e-38DNA-binding storekeeper protein-related transcriptional regulator