PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908741.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 323aa    MW: 34743.6 Da    PI: 4.4083
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908741.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05297319223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+k+F++   L+ H +  H
  XP_010908741.1 297 RCKSCSKTFNSENALQAHTKAkH 319
                     7*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.99296323IPR007087Zinc finger, C2H2
PROSITE patternPS000280298319IPR007087Zinc finger, C2H2
PfamPF121717.8E-5298316IPR022755Zinc finger, double-stranded RNA binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEFWGVEVKP GEIVKCDPGE DKYLHLSQAS LGEVKKDKGN ENVPIFVKFN DQKLVLGTLS  60
AEKCAQISYD LVFEKEFELS HSSKNVSVYF CGYKTVVADD DEADDFPDGD FDSDEDIQVA  120
QKVNGKTEVK DEQAKPSTGK VSVKADASAA KPKVKIEKAR KADKQNAVED DEDDGDDESE  180
EDEDESEEVS DDDDEDMAGA EDDSDDEDED ANSDEEDEAT PKKTESGKKR PAGSASKTPA  240
PEKKAKLVSP VGSQKTGGDG KKGGHAATPH PAKYAGRTPA GSDKSKQQTP KSAGSVRCKS  300
CSKTFNSENA LQAHTKAKHG AAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908741.10.0histone deacetylase HDT2
TrEMBLA0A2H3X6N81e-149A0A2H3X6N8_PHODC; histone deacetylase HDT2-like
STRINGXP_008779118.11e-150(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-30histone deacetylase 3