PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907930.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 281aa    MW: 30906 Da    PI: 9.6998
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907930.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-0593112221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C+ Cgk Fs++  L  H+r
  XP_010907930.1  93 PCTECGKLFSSWKALFGHMR 112
                     5******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0292114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.80692119IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-893114No hitNo description
Gene3DG3DSA:3.30.160.603.7E-494114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-894116IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-8210237No hitNo description
PfamPF139127.4E-11214239IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577215242IPR007087Zinc finger, C2H2
SMARTSM003553.1215237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDASMNTTTT RCYPQPQPHH DIFSPLPRPP PTLAAANSGA PPLLLLHWPD GSLNLPLPPP  60
DSVSYPPTTT TPKKRKPPPR KLDAASTSTA TPPCTECGKL FSSWKALFGH MRCHPERQWR  120
GIKPPPHFHR SSSPRATQFS DEEYQVASSL IMLANGPPSD SSSVDLTVHS KAVFGWLQHG  180
ARHKNTRSKG EEQVVGCEVS RKRAWLDSEA SGSAHKCNLC YKGFSSGQAL GGHKRCHLER  240
GEPQIRSSSP AKNYVLDLNL PPPMESNENS PRPVLDLRLR I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907930.10.0zinc finger protein ZAT3-like
TrEMBLA0A2H3XPN33e-99A0A2H3XPN3_PHODC; zinc finger protein ZAT3-like
STRINGXP_008786947.11e-100(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-37C2H2-like zinc finger protein