PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907810.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 186aa    MW: 20326.4 Da    PI: 5.0834
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907810.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000332951123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C++ Fs+   L  H++ H
  XP_010907810.1 29 YDCTFCKRGFSNAQALGGHMNIH 51
                    88*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.5E-52455IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.21E-62555No hitNo description
PROSITE profilePS5015711.2612956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEADHPSSDE PETAVPGERG GSSTRTRSYD CTFCKRGFSN AQALGGHMNI HRKDRAKLKQ  60
PSNLSQQFPF DVSNDFAPSY SPTPKNYPSQ PMHGSQDRGR MSTWAWMAPS EQDIPGNRIG  120
GPRQLSLFAE RPLREDGPAS AGSGERPEDQ VERPGFGAVA AELDLELRLG PEPTDDVPTA  180
GLKEFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907810.11e-136transcriptional regulator SUPERMAN
TrEMBLA0A2H3X4C81e-110A0A2H3X4C8_PHODC; zinc finger protein 6-like
STRINGXP_008778117.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-18C2H2 family protein