PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907804.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 271aa    MW: 30114.6 Da    PI: 8.7153
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907804.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000195375123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_010907804.1 53 YSCSFCRREFRSAQALGGHMNVH 75
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.78E-65079No hitNo description
PROSITE profilePS5015711.2195380IPR007087Zinc finger, C2H2
SMARTSM003550.00985375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MWTRRKSGER TLFGSPLHQI STSSSYNDSW EEQAFAEDSA GHLGGCVWPP RSYSCSFCRR  60
EFRSAQALGG HMNVHRRDRA RLRQSSSPAR ESHDGDQQHH RSPCTPPGTL HLGRVGSPVC  120
NSNSNPSCDV MASILSPRLS AASTGGNSKS SMVSPAHSAT TIHENPMKSL FTAAARSFAD  180
PTNVRQLTLP ELELGRENLK LREVGFRMSR NPGDEEETIT SSKRRRTDPL FPFCKGPTPI  240
DQQKLHSEVL SPFPDEELDL ELRLGHRPKD K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124875229superman protein
2l1o_A1e-124875229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907804.20.0uncharacterized protein LOC105034368
TrEMBLA0A2H3X4C31e-164A0A2H3X4C3_PHODC; zinc finger protein 11-like
STRINGXP_008778130.11e-165(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-28zinc-finger protein 10