PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906558.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 574aa    MW: 62897.6 Da    PI: 5.3033
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906558.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.91.6e-10171202137
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfg 37 
                     s+y+GV++++++grW+++I+d      + k+++lg+ +
  XP_010906558.1 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGTCD 202
                     78*******************......55******976 PP

2AP243.86.2e-14308358155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  XP_010906558.1 308 SRFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDKAAIKCNG 358
                     789*******.7******5553..2.26**********************99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.658172273IPR001471AP2/ERF domain
SMARTSM003802.7E-18172279IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-6242274IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-8243273IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-17308368IPR016177DNA-binding domain
CDDcd000182.27E-25308368No hitNo description
PfamPF008479.9E-10308358IPR001471AP2/ERF domain
PROSITE profilePS5103216.12309366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-16309366IPR001471AP2/ERF domain
SMARTSM003801.8E-32309372IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MAGDSGKKAG LGGEEARMWD LNNAALVEEE EGCCSPAAVD GGEEKEAAPG TASTSAEADN  60
EKDDSSSSAI VVEASDEREA DVGGAGKLFG FSISGHRDRS TSAVVTHQFF PLGSPEGTGG  120
GAGEVLEAAP PRAHWVGVRF FQSSEPGVVG KAVEAPQPVK KSRRGPRSRS SQYRGVTFYR  180
RTGRWESHIW DCGKQVYLGT CDVKNLYELM EIFVFILDDC GGVYICLSTF CXLLMFSMEL  240
TXIGGFDTAH AAARAYDRAA IKFRGVDADI NFSLDDYEED LKQMSNLTKE EFVQVLRRQS  300
TGFPRGSSRF RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEEEAARAYD KAAIKCNGKD  360
AVTNFDPSIY ENELDPPTSN TEHNLDLCLG SSGTKRNNLE PMDDESSNAM DQRLPIAFDP  420
EWNRSTRLKF DDKLKLPEEK ESRIHHPHSN ACFQSPVPFN GNEMFKYPLL QRNGDAFPMF  480
QIIPQQFNSS GFHQHPGCID GARTVGGGSL SLAIGCEQQQ KHSFWGNGGN NWPSASTLPS  540
QMFAMTTSAA SSGFPPQIAK LPPSWQQKNG FSLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906558.10.0PREDICTED: LOW QUALITY PROTEIN: floral homeotic protein APETALA 2-like
SwissprotP479271e-107AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLM0SNF11e-149M0SNF1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P12860_0011e-148(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-103AP2 family protein