PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905507.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 280aa    MW: 32026.2 Da    PI: 8.7739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905507.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003796118223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  H +  H
  XP_010905507.1  96 SCSVCSRVYPTSRLLSIHVSEaH 118
                     6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.16893IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807093IPR007087Zinc finger, C2H2
SMARTSM003555.495118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097118IPR007087Zinc finger, C2H2
SMARTSM003555.5133158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEAVGGEEEL GLGFPFWVAA CRRFKPGDPF FAAGDIEREL IAKHVALDLT EDERYQLQKM  60
EGGGINTVLC PIVGCGAQLN CLEDFEDHYH ARHTASCSVC SRVYPTSRLL SIHVSEAHDS  120
FFQAKVARGF PMYECLVEGC GVKLKCYKSR QQHLVDKHKF PRSFEFYRKA HPSKHQRQKY  180
QRRQAAYRWE GTKETHMDVD RNTLKQPRQK YRPKQAGPES EETNMEVEEK IDNLASAVSK  240
LSTSDSTPSS ISFGHRHARG FAFVPRSIRQ NQKQQSDAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905507.10.0zinc finger protein 511
TrEMBLA0A2H3Z2Y60.0A0A2H3Z2Y6_PHODC; zinc finger protein 511 isoform X1
STRINGXP_008807434.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-85zinc ion binding;nucleic acid binding;zinc ion binding