PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010905076.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 536aa    MW: 55720.7 Da    PI: 9.0566
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010905076.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-056991123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010905076.1 69 FVCEICNKGFQRDQNLQLHRRGH 91
                    89*******************88 PP

2zf-C2H2120.00064145167123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_010905076.1 145 WKCDKCSKKYAVQSDWKAHSKTC 167
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.42E-76891No hitNo description
PROSITE profilePS5015710.9496991IPR007087Zinc finger, C2H2
SMARTSM003550.0176991IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355220110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.7E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.42E-7140165No hitNo description
SMARTSM00355150145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MPVELENSSV MTVSNSASGE ASVSSSGQQQ AAPPPPAPAK KKRNLPGMPD PNAEVIALSP  60
KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TGKEVRKRVY VCPEPSCVHH  120
EPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR EYRCDCGTLF  180
SRRDSFITHR AFCDALAEES AKAQTNNTNA ASPTAPANKK AEEDGKAAPA PAPEKSSPLA  240
AIVGTELPRQ QVASSEQQRE PENPAPGMLQ YMPPPPPAPA PPPPPSSITI GGSNSSGTTS  300
SSGGNSSGSS TSLFASLFAS SVSATTAAQS TNFSDLISAM SRTDRALAVE PPSLCLSTNG  360
PAASLFSQPP QERRPFHPPP PPSPHMSATA LLQKAAQMGA AATSSSSFLR GFGLSASSTH  420
QDGLNDSSLH WHPQQQQVLE SEPAPILSAG LGLGLPYEST AAAAAAALPD LMMGQPPLFG  480
PKPATLDFLG LSMGPVGGAA TTGLSALITS IGGGLDMGAG AAAAGRFGGG SSPGKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35141209371Zinc finger protein JACKDAW
5b3h_F2e-35141209371Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010905076.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1
SwissprotQ9LVQ71e-155IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2H3X1E40.0A0A2H3X1E4_PHODC; protein indeterminate-domain 1-like
STRINGXP_008776861.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-104C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]