PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010904808.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 504aa    MW: 54061.1 Da    PI: 9.4933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010904808.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0579101123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_010904808.1  79 FVCEICNKGFQRDQNLQLHRRGH 101
                     89*******************88 PP

2zf-C2H211.10.0012185203523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg+ Fsrk+++ +H   +
  XP_010904808.1 185 DCGTAFSRKDSFITHRAFC 203
                     8**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.81E-678101No hitNo description
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PfamPF121718.0E-579101IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355250120150IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.81E-6150175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MSNITGDGGS FSSENHTGEE VQQQLPLHGT IAATTNGDGS NLQPPPLAVK KKRNLPGTPD  60
PTAEVIALSP TTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSTEVRKRVY  120
ICPETTCVHH NPSRALGDLT GIKKHFCRKH GEKKWKCDKC LKKYAVLSDW KAHTKICGTR  180
EYKCDCGTAF SRKDSFITHR AFCDALIEEN NKAKTSVMPT MSPNLQAQLP ELMMPMGTNT  240
TNLPVRVSDF DNHEIKNPLK GLAYDLMPTS LRSHNTMAGT TMLSSTSATT LFSSGSFHSS  300
CNGLDGGTKT GQPAIGSAHI SATALLQKAA QMGATATSGS AGATQRCFVS LMAGPDRNWV  360
QQHGMGANGG AFGNQFFDIG MGGSSAVIDA GVLNSTAGVF VGGGDRGHGF VKGLEHETGG  420
GLMQGGSGRS GLRYGGGSRD VTTLDFLGVS RARSVAAMGL HEQQQGMEFG GVGQKRLHGL  480
HPFQQQHQLS HSRAATMEKV VWDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-31151209361Zinc finger protein JACKDAW
5b3h_F5e-31151209361Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010904808.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9SCQ61e-111IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3Q0HRN80.0A0A3Q0HRN8_PHODC; protein indeterminate-domain 2-like
STRINGXP_008813374.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.17e-98indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]