PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010904558.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 601aa    MW: 64047.1 Da    PI: 9.1087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010904558.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-057597123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  XP_010904558.1 75 FICEVCNKGFQREQNLQLHRRGH 97
                    89*******************88 PP

2zf-C2H211.80.00073151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H +t+
  XP_010904558.1 151 WKCDKCSKKYAVQSDWKAHSKTC 173
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.7E-67497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.84E-77497No hitNo description
PfamPF121713.0E-57597IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997597IPR007087Zinc finger, C2H2
SMARTSM003550.00527597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355230116146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.84E-7146171No hitNo description
SMARTSM00355150151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MASASSTEPF FGIREEDHRN QMKQQQPASM PTSSSAAAPQ TAAPVKKKRN LPGNPNPDAE  60
VIALSPKALL ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLRQKSTKE VRRRVYVCPE  120
TTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAQESARIP TGLSTIGSHL YGNSSMALGL SQVNSQITSS  240
LQVQSHQSSN NILRLGGGSG SGSHFEHLIS SSNPSPFRPP QPLPSSAFFL GGASNQDFNE  300
ETQSHHSLLQ NKPFHGLMQL PDLQSRATAS SSTAAAANLF NLGFFSNSSS TSSISTSNIT  360
SNQNNHLLIS DPFSSGNGST ESTTLFSGNF MSDHMAAGMS PLLNTSMRNE SSLPQMSATA  420
LLQKAAQMGS TTSGGSSLLQ GFSSASPSGS RSTSFQAIFN GGSNGSGDAL RFQMENETRL  480
QDLMNSLANG NAGLFGGSGG VAAFAGSCTT GGHEQQAGGI GGFNSGLCNM DEAKFQHNIS  540
PGNLGGSDGL TRDFLGVGNM VRSMGGGLSQ RGRHHGIDIS SMDHEMKSAT SSQSFDGGTL  600
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-34147211367Zinc finger protein JACKDAW
5b3h_F7e-34147211367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010904556.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_010904558.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_010904560.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_029116694.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-131IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2H3ZAW80.0A0A2H3ZAW8_PHODC; protein indeterminate-domain 5, chloroplastic-like
STRINGXP_008811073.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-101indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]