PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K03284.1.p
Common NameEUGRSUZ_K03284
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 230aa    MW: 25256.7 Da    PI: 8.2211
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K03284.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.86.4e-3731023101
            DUF260   3 aaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                        aCk+lrrkCa+dCv+apyf  eq p++fa++hk+FGasnv kll ++p  er +a+ +++yeA+ar+rdPvyG+v++i++lqqq+  l+a+l
  Eucgr.K03284.1.p   3 GACKFLRRKCAADCVFAPYFRTEQgPARFAAIHKVFGASNVAKLLLHVPVAERCEAVFTIAYEAQARLRDPVYGCVSHIFALQQQVVYLQAQL 95 
                       69******************999989******************************************************************* PP

            DUF260  95 allkeel 101
                        ++k++l
  Eucgr.K03284.1.p  96 MQVKAQL 102
                       9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.281102IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-36399IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
RGGACKFLRR KCAADCVFAP YFRTEQGPAR FAAIHKVFGA SNVAKLLLHV PVAERCEAVF  60
TIAYEAQARL RDPVYGCVSH IFALQQQVVY LQAQLMQVKA QLAQNLMTNS INNSVAMPNP  120
HQQLGGDGSN NNMSGVQAFA ANHMMMMSNN SASPTSSLES IDHSNNSNNS NSAMMMVHRE  180
MESNRDDCYN YQELSFMLPP SSCTTKKRPP NCDLSELQAL AHTMMRNGS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K03284.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039235.11e-170PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB74e-62LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A059A7K61e-172A0A059A7K6_EUCGR; Uncharacterized protein (Fragment)
STRINGPOPTR_0005s24320.13e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.15e-49lateral organ boundaries-domain 16