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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K02535.1.p | ||||||||
Common Name | EUGRSUZ_K02535, LOC104426023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | TCP | ||||||||
Protein Properties | Length: 343aa MW: 38224.1 Da PI: 8.3527 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 78.1 | 2.5e-24 | 54 | 121 | 3 | 70 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk+ T +g+RdRR+Rlsa+ a +++ Lqd LG+ ++sk i+WL+++a + i +l+ ++ ++ Eucgr.K02535.1.p 54 GGKDRHSKVRTVRGLRDRRIRLSAPAAVQLYYLQDILGLTQPSKVIDWLIEAARHDIEKLPPLQIPQG 121 78***********************************************************9944433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.4E-24 | 55 | 121 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.329 | 55 | 113 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MITSSREKKS AFQAKEVGEK GCSQISKVAP SSSSRWSLEL RNNPRVVRIP RTFGGKDRHS 60 KVRTVRGLRD RRIRLSAPAA VQLYYLQDIL GLTQPSKVID WLIEAARHDI EKLPPLQIPQ 120 GFSEVINQQL LFPPESINFF DASLPFTKHG LISPSLTLLA GSAKMEVNED CVWSADDRTR 180 LKSKYYWDGI SKLSERSNEF ERGCFSDKSK QIDLNVRENQ EDISSSGTGL VSDQNLLPIG 240 LLNNTIGYRH YIPGLNSEDQ FILSPSNMTG PSSIPSCSPC WTGAGPIDNE HRKVNHFPLF 300 NSGSQLPSFT PASLKLYYDA LETKYSLLSR DESQANDNNG NC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-13 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-13 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K02535.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037245.1 | 0.0 | PREDICTED: transcription factor TCP5 isoform X3 | ||||
TrEMBL | A0A059A4B8 | 0.0 | A0A059A4B8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010037244.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM33951 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 4e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K02535.1.p |
Entrez Gene | 104426023 |