PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K02222.1.p
Common NameEUGRSUZ_K02222
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 230aa    MW: 24992.6 Da    PI: 9.7118
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K02222.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.83.4e-284107199
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C +dC+++p++       +q++++ +++k++G++ +l+ll + p + r+ +++sl+yeA+ r+ +P+yG+vg++++++++l+
  Eucgr.K02222.1.p   4 SCNGCRVLRKACGDDCPIRPCLhwiktSPSQSNATLFLAKFYGRAGLLNLLLSGPAHLRPSIFKSLLYEACGRIVNPIYGSVGLLWSGSWHLC 96 
                       6*********************9998766889************************************************************* PP

            DUF260  89 qlkaelallke 99 
                       q++++++l+++
  Eucgr.K02222.1.p  97 QAAVDAVLAGD 107
                       ****9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9823109IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MKGSCNGCRV LRKACGDDCP IRPCLHWIKT SPSQSNATLF LAKFYGRAGL LNLLLSGPAH  60
LRPSIFKSLL YEACGRIVNP IYGSVGLLWS GSWHLCQAAV DAVLAGDPIA RVSSESAIGC  120
ATPPLEAGDI RHVPKTKPSA AHPDQLRKVR SRRRRFKRSR GSAADRELAE AEAGERAADG  180
DDSELELTLR LEPRRARRAS EEPQRDQITG VCDGDTRVLS SGLDVRRRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K02222.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036886.11e-139PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8865e-68LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A059A3691e-165A0A059A369_EUCGR; Uncharacterized protein
STRINGVIT_17s0000g03720.t013e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-68LOB domain-containing protein 41