PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00175.1.p
Common NameEUGRSUZ_J00175, LOC104421045
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 175aa    MW: 19160.9 Da    PI: 7.1348
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00175.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.74.7e-4461051100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasn++k+l++lp  +r da+sslvyeA ar+rdPvyG+vg i+ lq+q++ql+++
  Eucgr.J00175.1.p   6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNISKMLQELPVCQRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVSQLQTQ 98 
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Eucgr.J00175.1.p  99 LAVAQAE 105
                       ***9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.9365106IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-436103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGGHSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNISKM LQELPVCQRA  60
DAVSSLVYEA SARVRDPVYG CVGAISYLQN QVSQLQTQLA VAQAEIMCFQ MQQDSAVMQL  120
PRMMDVPDDD RSSSPFLLPN NLTHFLNLSP ASSGNVTHDH PLKRESILGH DVVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00175.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031173.11e-127PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW37e-71LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A059A9Y51e-127A0A059A9Y5_EUCGR; Uncharacterized protein
STRINGPOPTR_0010s19180.11e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-72LBD family protein