PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02293.1.p
Common NameEUGRSUZ_H02293, LOC104457394
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 243aa    MW: 25868.4 Da    PI: 7.9239
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02293.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.5e-312103197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++ ++
  Eucgr.H02293.1.p   2 SCNGCRVLRKGCSESCILRPCLqwieaPEAQGHATVFVAKFFGRAGLMSFISAVPETQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWPVC 94 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelall 97 
                       q+++e++l+
  Eucgr.H02293.1.p  95 QAAVETVLR 103
                       ***999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6181107IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIEAPE AQGHATVFVA KFFGRAGLMS FISAVPETQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WPVCQAAVET VLRGGSLRAM PELLDGGGGG  120
GGSLPASDEA SEAGDTCADA WKLRDPNPGS RFSTSRSRIS PKRKRLDAAA DNAKLLLQPM  180
DLDLRLTPTD FQAKTKPAVK AEHQTRRPGT PSMTSEESGT TTCFESNNNV GEPETKLLNL  240
FA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02293.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070643.11e-178PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN234e-92LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A059AZY71e-178A0A059AZY7_EUCGR; Uncharacterized protein
STRINGVIT_07s0129g00330.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.17e-83LOB domain-containing protein 38