PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G03078.1.p
Common NameEUGRSUZ_G03078, LOC104454412
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 183aa    MW: 20304.5 Da    PI: 8.6711
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G03078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.14.1e-40201191100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+l+rkC++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l+++
  Eucgr.G03078.1.p  20 SCAACKLLKRKCTSTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMLELQHD 112
                       6******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la ++++
  Eucgr.G03078.1.p 113 LAIARAR 119
                       *999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.30319120IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3920117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRAMRMKQAM KGHEPRSSSS CAACKLLKRK CTSTCIFAPY FRSDEPKKFA KVHKVFGASN  60
VSKILVEVPE EQREDTVNSL AYEAEARLRD PVYGCIGAIA LLQRKMLELQ HDLAIARARL  120
ARYTVPAVST SSPSVLMDEN VGMVSFYDMP CCSGVNESFG QSSSQLTQVQ PMNDFGQFPY  180
IF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G03078.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067552.11e-135PREDICTED: LOB domain-containing protein 21 isoform X1
RefseqXP_010067553.11e-135PREDICTED: LOB domain-containing protein 21 isoform X2
SwissprotQ9SRL81e-67LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A059BI251e-135A0A059BI25_EUCGR; Uncharacterized protein
STRINGVIT_13s0067g01450.t018e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.18e-67LOB domain-containing protein 21