PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02955.1.p
Common NameEUGRSUZ_G02955, LOC104454318
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 223aa    MW: 24376.4 Da    PI: 4.8166
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02955.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-3971071100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC++dCv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lq+q+++l++
  Eucgr.G02955.1.p   7 SCGACKFLRRKCTSDCVFAPYFCYDQaSTHFAAVHKVFGASNVSKLLLHLPVHTRSDAAITISYEALARMRDPIYGCVAHIFALQEQVANLQE 99 
                       6************************9779**************************************************************** PP

            DUF260  93 elallkee 100
                       e++ l+++
  Eucgr.G02955.1.p 100 EIEILGTQ 107
                       **998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3566108IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-377103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCTS DCVFAPYFCY DQASTHFAAV HKVFGASNVS KLLLHLPVHT  60
RSDAAITISY EALARMRDPI YGCVAHIFAL QEQVANLQEE IEILGTQMAN LGVGVPSWRN  120
SPVPGNPSNF GPQFSGSDAM NVQFYLNHQQ DPLLPQAEAA TTTNLQALES SMNEEFPPIY  180
GWEDQNPFCD NYPNLLERLF EGVDREAFSS CSWLNGGNGL GK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02955.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067432.11e-168PREDICTED: LOB domain-containing protein 29
SwissprotQ9LHS83e-61LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A059BH531e-168A0A059BH53_EUCGR; Uncharacterized protein
STRINGPOPTR_0010s20800.18e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-62LOB domain-containing protein 33