PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G02321.1.p
Common NameEUGRSUZ_G02321
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 216aa    MW: 23428.5 Da    PI: 7.8276
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G02321.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.91.8e-294106198
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++dCv++p++     +++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++  +
  Eucgr.G02321.1.p   4 SCNGCRVLRKGCSDDCVIRPCLqwiksADSQAHATVFLAKFYGRAGLINLINAGPPHLRPAIFKSLLYEACGRIINPIYGSVGLLWSGNWGHC 96 
                       6*********************9999667889************************************************************* PP

            DUF260  89 qlkaelallk 98 
                       q++++++l++
  Eucgr.G02321.1.p  97 QAAVDAVLRG 106
                       **99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.193109IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCV IRPCLQWIKS ADSQAHATVF LAKFYGRAGL INLINAGPPH  60
LRPAIFKSLL YEACGRIINP IYGSVGLLWS GNWGHCQAAV DAVLRGSSHI MRHPSLDSGS  120
TPAASQPHPA LKAYDIRHFP KAGGSQGLHR ARFKRPRLGV DLKPDGWPHP EASYSTSPED  180
DSVFSVETVE AEPEGPSQPS QILAFDGQGG ESDEDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G02321.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066723.11e-160PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA301e-71LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A059BF381e-160A0A059BF38_EUCGR; Uncharacterized protein (Fragment)
STRINGVIT_01s0011g03540.t014e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.16e-73LOB domain-containing protein 42