PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G01261.1.p
Common NameEUGRSUZ_G01261, LOC104453101
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 224aa    MW: 24302.7 Da    PI: 8.6408
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G01261.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.81.7e-282102196
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++ C+l++++     p++q++++ +v+k+FG++ ++++++a+p ++r ++++sl++eA  r+ +Pv Gavg+i++++++l+
  Eucgr.G01261.1.p   2 SCNGCRVLRKGCSDTCMLRQCLqlidsPQAQAHATLFVAKFFGRAALMSFVSAVPASHRAALFQSLLFEAVGRTVNPVGGAVGLIWAGNWRLC 94 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelal 96 
                       +++++++l
  Eucgr.G01261.1.p  95 EAAVDTVL 102
                       *9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5771107IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDTCMLR QCLQLIDSPQ AQAHATLFVA KFFGRAALMS FVSAVPASHR  60
AALFQSLLFE AVGRTVNPVG GAVGLIWAGN WRLCEAAVDT VLRGGAPHAL LEPADAVPSF  120
ELDRSSVSEA DHFRPRSPPS PPPPPPPPPP RHPQPPRDEP TKAGEDRLDL SLMSPDLRRR  180
RRRRPATPSE EGEESETTTA TWRSGSSEGG WPRQDAKLLR LFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176184LRRRRRRRP
2177183RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G01261.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065916.11e-160PREDICTED: LOB domain-containing protein 37-like
TrEMBLA0A059BBY21e-160A0A059BBY2_EUCGR; Uncharacterized protein
STRINGSolyc02g092550.2.16e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-56LOB domain-containing protein 38