PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01414.1.p
Common NameEUGRSUZ_E01414, LOC104444342
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 245aa    MW: 24872.2 Da    PI: 7.7391
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01414.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.71.2e-40331331100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+a
  Eucgr.E01414.1.p  33 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHRRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQA 125
                       7***********************9989***************************************************************** PP

            DUF260  93 elallkee 100
                       el++l+++
  Eucgr.E01414.1.p 126 ELSYLQAH 133
                       ***99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.99932134IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-4033131IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSSNPSSSGG GGGGGGGSGS GGGSGSGSGS GGPCGACKFL RRKCVPGCIF APYFDSEQGA  60
AHFAAVHKVF GASNVSKLLL HIPVHRRLDA VVTICYEAQA RLRDPVYGCV AHIFALQQQV  120
VNLQAELSYL QAHLTTLELP VPLPPPPPPP AMGPQLSIAD LPSASSIPAT YDLSSLFDPM  180
AQAAWMVPQR QIDFRQFEGS CGGGGSSAAG GGDLNALARE LLRRQGSPPP GCIDAMSSPS  240
SLSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1717SGGGGGGGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01414.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2267064e-82AC226706.2 Oryza minuta clone OM__Ba0084M12, complete sequence.
GenBankCP0126114e-82CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankAC1186724e-82AC118672.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0078P24, from chromosome 3, complete sequence.
GenBankAP0149594e-82AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056297.11e-175PREDICTED: LOB domain-containing protein 18-like
SwissprotO221319e-85LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A059C3F21e-175A0A059C3F2_EUCGR; Uncharacterized protein
STRINGVIT_15s0048g00830.t011e-92(Vitis vinifera)
STRINGGLYMA03G02620.11e-92(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-81LOB domain-containing protein 18