PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D01630.1.p
Common NameEUGRSUZ_D01630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 165aa    MW: 18446.2 Da    PI: 8.9136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D01630.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-084083755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       + r+RR++i ++  eL +l+P       +K++ ae+L+ A +Y+k+Lq
  Eucgr.D01630.1.p 40 LAARQRRRKITEKTLELGKLVPGG-----RKMNTAEMLQAAYKYVKYLQ 83
                      567*******************96.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.1863382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-123692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.84E-83686No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1137102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-113988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-64083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MLPPQPEPHF QQERCGSCGG RENGTKKPSV GGETLSTQSL AARQRRRKIT EKTLELGKLV  60
PGGRKMNTAE MLQAAYKYVK YLQAQVGILE LNESIQKNEE TRHSKRELQV LLESPKIQEK  120
LYAEEKCLAT KELVQAFAKD PEVQSTDTIG KEIVQLLCAH GWNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D01630.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053035.11e-116PREDICTED: transcription factor bHLH53 isoform X2
SwissprotQ84RD02e-30BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A059CFM41e-116A0A059CFM4_EUCGR; Uncharacterized protein
STRINGXP_010053034.11e-108(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.17e-33bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]