PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03991.1.p
Common NameEUGRSUZ_B03991, LOC104434107
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 160aa    MW: 17530 Da    PI: 8.2239
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03991.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601383.4e-4391081100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck+lrr+C+kdC++apyfp ++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg+i+ lq+q+++l+ +
  Eucgr.B03991.1.p   9 PCASCKLLRRRCSKDCIFAPYFPPHDPHKFAIVHKVFGASNLSKMLQELPVNQRGDAVSSLVYEANARVRDPVYGCVGTISYLQNQVSELQLQ 101
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Eucgr.B03991.1.p 102 LAAAQAE 108
                       **99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.3988109IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-439106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGGSSGSSPC ASCKLLRRRC SKDCIFAPYF PPHDPHKFAI VHKVFGASNL SKMLQELPVN  60
QRGDAVSSLV YEANARVRDP VYGCVGTISY LQNQVSELQL QLAAAQAEVL SMQMHQKPHL  120
VQQDRETSFL MAGDNFNSVS HYIAASVIQD PLKRESFST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03991.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045372.11e-116PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW38e-71LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A059DAN81e-116A0A059DAN8_EUCGR; Uncharacterized protein
STRINGPOPTR_0001s28840.11e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-56LBD family protein