PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.B03016.1.p
Common NameEUGRSUZ_B03016
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 263aa    MW: 28818.7 Da    PI: 8.7498
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.B03016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.62.8e-264110198
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer....edamsslvyeAearardPvyGavgvilklq 84 
                       +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +++l++a p + r     +++ sl+yeA+ r+ +P+yG+vg++++++
  Eucgr.B03016.1.p   4 SCNGCRVLRKACSEDCTIRPCLqwiqsPESQANATTFLAKFYGRAGLINLINAGPSNLRpgikIHLLLSLLYEACGRIVNPIYGSVGLLWSGN 96 
                       6*****************************************************99998666578999************************* PP

            DUF260  85 qqleqlkaelallk 98 
                       +  +q++++++l++
  Eucgr.B03016.1.p  97 WAQCQSAVDAVLQG 110
                       *******9998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.4243113IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-204106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MRMSCNGCRV LRKACSEDCT IRPCLQWIQS PESQANATTF LAKFYGRAGL INLINAGPSN  60
LRPGIKIHLL LSLLYEACGR IVNPIYGSVG LLWSGNWAQC QSAVDAVLQG SSQFLRSPSL  120
DSTGPRLKPC DIRHVRKTSG SGGLRKIRTG TQFKRSSSNR DKLGTEPEEL FGREGSKWIY  180
PGPIYEETSH DSRAAANRES AEAESIFSVE TVEASLANLG KRNRMLKFDW PAEESPESPL  240
QLELGLGVKP SSHPSEPDFG RH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.B03016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044265.10.0PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8863e-66LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A059D7D30.0A0A059D7D3_EUCGR; Uncharacterized protein
STRINGVIT_01s0011g03540.t012e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-66LOB domain-containing protein 41