PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS785330.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 199aa    MW: 22997 Da    PI: 8.5465
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS785330.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.2e-062443120
                  EEETTTTEEESSHHHHHHHH CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                  ++Cp C+k+F+r  n++ H+
  EcS785330.10 24 FSCPVCSKTFNRYNNMQMHM 43
                  89*****************9 PP

2zf-C2H213.80.00017109131123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C +C+k+F  + + ++H +++
  EcS785330.10 109 FACRKCSKPFAVRGDWRTHEKNC 131
                   78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0542446IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.65E-72446No hitNo description
Gene3DG3DSA:3.30.160.601.1E-62443IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.2422451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
SMARTSM0035526072104IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.8E-595129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.65E-7104129No hitNo description
SMARTSM00355110109129IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
NPNLIDGKYW IPSPAQILVG PTQFSCPVCS KTFNRYNNMQ MHMWGHGSQY RKGPDSLKGT  60
KPASSMLRLP CYCCAQGCRN NIDHPRSRPL KDFRTLQTHY KRKHGAKPFA CRKCSKPFAV  120
RGDWRTHEKN CGKLWFCICG SDFKHKRSLK DHVRAFGDGH APHTVEVCEL EEEEEEEEED  180
DGAIEDHYRR IVQGSGYFY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046596.11e-151PREDICTED: zinc finger protein WIP6
SwissprotQ9FX681e-105ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A059D6K91e-150A0A059D6K9_EUCGR; Uncharacterized protein
STRINGXP_010046596.11e-150(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-107C2H2-like zinc finger protein