PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS750174.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 150aa    MW: 16672.6 Da    PI: 7.0606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS750174.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-052850123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C  C++ Fs+   L  H++ H
  EcS750174.20 28 YTCAFCKRGFSNAQALGGHMNIH 50
                  9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-42652IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-62654No hitNo description
PROSITE profilePS5015711.1772855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDINQLNLEK PERVFMSTDH DQSPVKSYTC AFCKRGFSNA QALGGHMNIH RRDRAKLRES  60
MEESALSLGV IPSKNTAAAG SHEDEKSGNK TPPKGPRTMS AEDKTGAQAR DDGIEQERMQ  120
LSQSSDRIEL DLELRLGHER PLERSPASPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021657230.14e-29transcriptional regulator TAC1-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-19C2H2 family protein