PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS735233.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 144aa    MW: 16506.4 Da    PI: 10.9159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS735233.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.85.7e-181151343
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                  i n+  r+ tf kR+ng++KK +ELS+LC+++++ ii+ss 
  EcS735233.10 11 IANSAARKATFKKRKNGLMKKVSELSTLCGIDACAIIYSSY 51
                  89*************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.17150IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-24160IPR002100Transcription factor, MADS-box
CDDcd002663.99E-27285No hitNo description
SuperFamilySSF554554.32E-24295IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-10323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-181150IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MTRKKVTLAY IANSAARKAT FKKRKNGLMK KVSELSTLCG IDACAIIYSS YQAEPEVWPS  60
TLGVRRAIAR FKNMSEMDQS KRMVNQQEFI RQRIVKAECH DLFFPFGEKK ERFRGICLKR  120
RTNGPKLGVG SPKPIPRATL DFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLAYIANSAARKATFKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058574.12e-62PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-34AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A059C5R34e-61A0A059C5R3_EUCGR; Uncharacterized protein
STRINGXP_010058574.17e-62(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-36AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]