PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS735089.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 129aa    MW: 15078.3 Da    PI: 8.948
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS735089.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000347293223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +Cp C+++F++   L  H + H
  EcS735089.10 72 PCPVCDERFRSMRALFCHSKIH 93
                  5*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.6123IPR015880Zinc finger, C2H2-like
PfamPF139126.8E-4125IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-6123No hitNo description
PROSITE patternPS000280323IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-66693No hitNo description
SMARTSM003550.487193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0557198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
PfamPF139120.00357395IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
YPCKLCDRIY SIGPMLGGHM RCHMDMNLPE REPPLEIGSS SADERRLGYY LRENPKKTWK  60
FSKLKESAQE KPCPVCDERF RSMRALFCHS KIHSGKDDES GDWCKGRGKG SRSMKFCQDH  120
TRPIHDRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034406.11e-37PREDICTED: uncharacterized protein LOC104423640
STRINGXP_010034401.11e-68(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16241913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.14e-07C2H2-like zinc finger protein