PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS733179.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19578.1 Da    PI: 7.5178
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS733179.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.61.6e-18251150
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                  krien+ +r +tfskRr gi K A+EL +LC aev v+++s++gk + ++
  EcS733179.10  2 KRIENEERRLITFSKRRSGIYKIASELVTLCRAEVGVVVLSPSGKPFSFA 51
                  79******************************************977765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.15E-21169IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.194154IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-17153IPR002100Transcription factor, MADS-box
PfamPF003196.0E-21350IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-71631IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-73152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MKRIENEERR LITFSKRRSG IYKIASELVT LCRAEVGVVV LSPSGKPFSF AHPSIDTVAN  60
QFLNRNPPPI DGSYALVESN RQARINELNQ QYDELINQIK VEEARNKALK QLTEGKGNDA  120
WWEAPIEELN LEELHQLEVR MEDLRRTLWM SINQRTRGKE SKSIQGQSSD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059071.11e-116PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A059C7981e-115A0A059C798_EUCGR; Uncharacterized protein
STRINGXP_010059074.11e-120(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-30AGAMOUS-like 62