PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS725781.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 185aa    MW: 19888.6 Da    PI: 9.9913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS725781.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001290112223
                   EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    C++Cg+ F+  +  + H  + H
  EcS725781.10  90 ICHKCGEQFKKLDAVEAHHLSkH 112
                   6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028091112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
IMGIGGKVGG NHSGSDSTSS TFVGTLHPGT PGPRGQYMVP SSYSFPRSMS TPSRKIDGSS  60
ATSGGSRSGG FPKSRTMVGP DAHSGSSVLI CHKCGEQFKK LDAVEAHHLS KHAVTELSDG  120
DSSKRIVEII CQTSWLKSEH SSCGQIERVL KVHNMQRTLA RFEEYREMVK IRASKLSKKH  180
PCCLA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049497.11e-126PREDICTED: uncharacterized protein LOC104438113 isoform X1
TrEMBLA0A059CDF31e-104A0A059CDF3_EUCGR; Uncharacterized protein
STRINGXP_010049497.11e-125(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3553812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.12e-48C2H2 family protein