PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS675942.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 53aa    MW: 5924.59 Da    PI: 10.8251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS675942.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-052244123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C  C +sF ++  L  H++ H
  EcS675942.10 22 YTCRLCFRSFVSSQALGGHQNAH 44
                  9*******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.71E-81949No hitNo description
Gene3DG3DSA:3.30.160.602.1E-52048IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.3E-62247IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2612249IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 53 aa     Download sequence    Send to blast
ESSTANSNPP AANLSLEPPR PYTCRLCFRS FVSSQALGGH QNAHRKERRE AKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024231.16e-31PREDICTED: zinc finger protein 1-like
STRINGXP_010024231.12e-30(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-12zinc-finger protein 1