PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS671735.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 55aa    MW: 6132.24 Da    PI: 9.1371
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS671735.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260422.6e-13454146
        DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkll 46
                  +C++C+vlr++C++dCv++p++     +++q++++ +++k++G++ +++l+
  EcS671735.10  4 SCNGCRVLRKGCSDDCVIRPCLqwiksADSQAHATVFLAKFYGRAGLINLI 54
                  6*********************9999667889**************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.176355IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-10454IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDDCV IRPCLQWIKS ADSQAHATVF LAKFYGRAGL INLIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066723.19e-36PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA302e-31LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A059BF385e-36A0A059BF38_EUCGR; Uncharacterized protein (Fragment)
STRINGGLYMA19G06280.11e-30(Glycine max)
STRINGGSMUA_Achr4P03700_0012e-30(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-32LOB domain-containing protein 42