PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS670027.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 249aa    MW: 28334.6 Da    PI: 10.0875
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS670027.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.5e-161051243
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                   i n+s r   f kR++g++KK  ELS+LC+++++ i++s+ 
  EcS670027.10 10 YIANDSSRRAAFKKRKKGLMKKVGELSTLCGINACAIVYSPY 51
                  599*************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.89E-24185IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.128161IPR002100Transcription factor, MADS-box
CDDcd002667.01E-21286No hitNo description
PRINTSPR004049.3E-8323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTRRKVKLEY IANDSSRRAA FKKRKKGLMK KVGELSTLCG INACAIVYSP YDRQPDLWPP  60
SRVAVQRIIS RFKEMPDMEQ SKKMVSQEAY LRQRITRAND QLKKHSKENR EREVTKMMFN  120
ILTSTFTGTA PVWPSLRVMD LHDLGWVVDQ YCKDVVKRSE NLKEALGISG SEVAAPLPPP  180
PHVPTEEYPE TEGVGQVNTG VQKRPWFLNL ANPPEPNVPT FFGNELMLLP FGGNPNNNTT  240
NNPQNVVWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLEYIANDSSRRAAFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010046161.11e-149PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-51AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A059D3M61e-149A0A059D3M6_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010046161.11e-148(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-48AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]