PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS597193.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 172aa    MW: 18771.8 Da    PI: 9.2311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS597193.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003992114123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cg  F+    L  H+r+H
  EcS597193.10  92 HECSICGLEFPMGQALGGHMRRH 114
                   78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.38E-841114No hitNo description
PROSITE profilePS5015710.5964370IPR007087Zinc finger, C2H2
PfamPF139121.5E-104368IPR007087Zinc finger, C2H2
SMARTSM003550.544365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139124.1E-1291116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.18292119IPR007087Zinc finger, C2H2
SMARTSM003550.1292114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MVKRDREDAE VEALAVANCL MLLPRVGGCA DSNRESRSTE RMFACKTCNR EFSSFQALGG  60
HRTSHKKQKL IPGGLFHLGC TADSSPAKPK RHECSICGLE FPMGQALGGH MRRHRATMAE  120
SLAAEAAKPV PVLKRSNSKR VMGLDLNSSL TEDDLTLRLG KVAPPLVLDL FL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043589.11e-117PREDICTED: zinc finger protein ZAT8
TrEMBLM9Z0U51e-116M9Z0U5_EUCGR; C2H2-type zinc finger protein 2
STRINGXP_010043589.11e-117(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-34C2H2 family protein