PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS580600.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 95aa    MW: 10357.6 Da    PI: 10.669
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS580600.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-171563149
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  k+ien+s r +tfskR+  i KKA+EL +LC+aev  + fs++g+ + +
  EcS580600.10 15 KQIENESSRLITFSKRKSSINKKASELVTLCGAEVGFVAFSPSGNPFSF 63
                  78*****************************************986666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-16766IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-14929IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-211382IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.0071467IPR002100Transcription factor, MADS-box
PfamPF003193.0E-211763IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MAGRQTGENP RPGMKQIENE SSRLITFSKR KSSINKKASE LVTLCGAEVG FVAFSPSGNP  60
FSFAHPSIDA VANRFLNRNP SPNNSSQALV ESYRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059060.19e-64PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU43e-22AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A059C6S26e-52A0A059C6S2_EUCGR; Uncharacterized protein (Fragment)
TrEMBLA0A059C7K06e-52A0A059C7K0_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010059060.14e-63(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.14e-25AGAMOUS-like 57
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]