PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS540542.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 55aa    MW: 6257.26 Da    PI: 9.6905
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS540542.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.49.2e-29245851
                  HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   rqvtfskRr+g+lKKA+ELSvLCdaevaviifs++g+lye+ss
  EcS540542.10  2 SRQVTFSKRRTGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 45
                  69****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.03E-24149IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.539147IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-23146IPR002100Transcription factor, MADS-box
PfamPF003192.2E-25143IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-18924IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-182445IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
TSRQVTFSKR RTGLLKKAYE LSVLCDAEVA VIIFSQKGRL YEFSSTSEYV QVPIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-162471661Myocyte-specific enhancer factor 2B
1tqe_Q2e-162471661Myocyte-specific enhancer factor 2B
1tqe_R2e-162471661Myocyte-specific enhancer factor 2B
1tqe_S2e-162471661Myocyte-specific enhancer factor 2B
6c9l_A2e-162471661Myocyte-specific enhancer factor 2B
6c9l_B2e-162471661Myocyte-specific enhancer factor 2B
6c9l_C2e-162471661Myocyte-specific enhancer factor 2B
6c9l_D2e-162471661Myocyte-specific enhancer factor 2B
6c9l_E2e-162471661Myocyte-specific enhancer factor 2B
6c9l_F2e-162471661Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035068.11e-25PREDICTED: MADS-box protein AGL42
RefseqXP_010041409.28e-26PREDICTED: MADS-box protein AGL42-like
SwissprotQ9FIS14e-22AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A058ZX094e-27A0A058ZX09_EUCGR; Uncharacterized protein
STRINGXP_010035068.14e-25(Eucalyptus grandis)
STRINGXP_010041409.11e-25(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.42e-24AGAMOUS-like 42