PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS508057.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 128aa    MW: 13789.8 Da    PI: 8.5842
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS508057.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.4e-3971071100
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                   +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+
  EcS508057.10   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLANLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVFNLQAQLAS 103
                   7*************************89********************************************************************9 PP

        DUF260  97 lkee 100
                   lke+
  EcS508057.10 104 LKEQ 107
                   9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2156108IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-387105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLANLPVSD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVFNLQAQ LASLKEQATQ SLCAPSSTRG  120
SLNEKYSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039047.12e-91PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9M2J74e-67LBD29_ARATH; LOB domain-containing protein 29
SwissprotQ9SLB67e-67LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A059D2Q12e-91A0A059D2Q1_EUCGR; Uncharacterized protein
STRINGVIT_07s0005g03020.t011e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-68lateral organ boundaries-domain 29