PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC072672.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 203aa    MW: 22078.7 Da    PI: 9.3142
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC072672.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014112134223
                   EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    C++Cg+ F+  +  + H  + H
  EcC072672.10 112 ICHKCGEQFKKLDAVEAHHLSkH 134
                   6*****************98877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280113134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MFRRWSNSHH SEEDDSLQFE SKIMGIRGKV GGNHSGSDSI SSTFVGTLHP ETPGPRGQYM  60
VPSSYSFPRS MSTPSRKIDG SSATSGGSRS GGFPKSRTMV GPDAHSGSLV LICHKCGEQF  120
KKLDAVEAHH LSKHAVTELS DGDSSKRIVE IICQMSWLKS EHSSCGQIER VLKVTTCKAP  180
SPGSKNIERW SRSEPASYPR STP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049497.11e-120PREDICTED: uncharacterized protein LOC104438113 isoform X1
TrEMBLA0A059CDF34e-76A0A059CDF3_EUCGR; Uncharacterized protein
STRINGXP_010049497.11e-119(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3553812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.14e-25C2H2 family protein