PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055250.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 140aa    MW: 16196.8 Da    PI: 10.1503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055250.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000167394223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C++C++ F ++ n+krH r+H
  EcC055250.10 73 RCNKCHREFFSSINYKRHVRVH 94
                  7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8897299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807495IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MSVAKVKTSN ALDGMKVEDR NDSLNYIRQA IGKEPLLSLP RSGDNSFQWI HPLLQALDHQ  60
DLPGWPLKIP MQRCNKCHRE FFSSINYKRH VRVHHRLRKL DKDSSKNRDL LGPFWDKVTS  120
CFLFSSLMGL NLCNGVAFLF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039737.15e-80PREDICTED: uncharacterized protein LOC104428444
RefseqXP_018715807.12e-78PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104415429
TrEMBLA0A058ZXJ01e-78A0A058ZXJ0_EUCGR; Uncharacterized protein
STRINGXP_010025018.12e-78(Eucalyptus grandis)
STRINGXP_010039737.12e-79(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.12e-21C2H2-like zinc finger protein