PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055193.60
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 258aa    MW: 28485.2 Da    PI: 9.1367
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055193.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.94.2e-304106198
        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                   +C++C+vlr++C++dC+++p++     p++q++++ +++k++G++ +++l++a p + r+++++sl+yeA+ r+ +P+yG+vg+++++++  +q+++
  EcC055193.60   4 SCNGCRVLRKACSEDCAIRPCLqwiqsPESQANATTFLAKFYGRAGLINLINAGPSHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGNWAQCQSAV 100
                   6***********************************************************************************************9 PP

        DUF260  93 elallk 98 
                   +++l++
  EcC055193.60 101 DAVLQG 106
                   998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.6333109IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006289Biological Processnucleotide-excision repair
GO:0006308Biological ProcessDNA catabolic process
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic process
GO:0005634Cellular Componentnucleus
GO:0003684Molecular Functiondamaged DNA binding
GO:0004519Molecular Functionendonuclease activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MRMSCNGCRV LRKACSEDCA IRPCLQWIQS PESQANATTF LAKFYGRAGL INLINAGPSH  60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GNWAQCQSAV DAVLQGSSQF LRSPSLDSTG  120
PRLKPCDIRH VRKTSGSGGL RKIRTRTQFK RSSSNRDKLG TEPEELFGRE GSKWIYPGPI  180
YEEASHDSRA AANRESAEAE SIFSVETVEA SLANLGKRNR MLKFDWPAEE SPESPLQLEL  240
GLGVKPSSHP SEPDFGRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044265.10.0PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8863e-71LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A059D7D30.0A0A059D7D3_EUCGR; Uncharacterized protein
STRINGVIT_01s0011g03540.t012e-83(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-71LOB domain-containing protein 41