PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055184.180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 57aa    MW: 6357.28 Da    PI: 9.982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055184.180genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024527123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C++C k Fs+   L  H r H
  EcC055184.180  5 HICSICRKDFSSGQALGGHKRAH 27
                   68**************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-7333No hitNo description
Gene3DG3DSA:3.30.160.602.8E-4327IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.4E-11428IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.845532IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006629Biological Processlipid metabolic process
GO:0015074Biological ProcessDNA integration
GO:0016020Cellular Componentmembrane
GO:0003676Molecular Functionnucleic acid binding
GO:0004571Molecular Functionmannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
KMKRHICSIC RKDFSSGQAL GGHKRAHYVK NPETNAEMPT SAATQQRLAD ITNMVDL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034406.13e-32PREDICTED: uncharacterized protein LOC104423640
STRINGXP_010034406.11e-31(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.15e-11salt tolerance zinc finger