PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055184.110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 259aa    MW: 29206 Da    PI: 8.3817
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055184.110genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-055374223
                   EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                   +C+ C+k+F++   L  H++ H
  EcC055184.110 53 PCSVCHKRFRSTTALFGHMKIH 74
                   5*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.1595279IPR007087Zinc finger, C2H2
SuperFamilySSF576672.61E-55377No hitNo description
PfamPF139126.0E-75476IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006629Biological Processlipid metabolic process
GO:0015074Biological ProcessDNA integration
GO:0016020Cellular Componentmembrane
GO:0003676Molecular Functionnucleic acid binding
GO:0004571Molecular Functionmannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSCHMAKNIL RREPSLAIGN GSGKARRLGY FLRENPKKSW KFLGLMENAQ ENPCSVCHKR  60
FRSTTALFGH MKIHLSKDDE RGNRCADRGK GSGSMKSCQD RARPIHDGER LNLSLSSEDR  120
YVGLSKTKGD LLLSVLFDDE AMHMTRRKRT PRVSCDVDER TEGILFSVTN GFSFSSEAEQ  180
DPANEAAVEL MMMSRGEAGF NSSGLGIEHF RKSSALDFID MEKLRITEAS EYNERHSRGY  240
TRMQQEGVEL EVDLVTRVG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034406.11e-167PREDICTED: uncharacterized protein LOC104423640
STRINGXP_010034406.11e-166(Eucalyptus grandis)