PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054806.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 369aa    MW: 41333.7 Da    PI: 8.8412
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054806.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-056688123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ C+k +  +s++k H++t+
  EcC054806.20 66 WVCERCSKGYAVQSDYKAHLKTC 88
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.5E-55387IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.91E-55587No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006071Biological Processglycerol metabolic process
GO:0006468Biological Processprotein phosphorylation
GO:0003676Molecular Functionnucleic acid binding
GO:0004371Molecular Functionglycerone kinase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MHRRRHKVPW KLLKRENPAG PGVVARKRVF VCPEPTCLHH DPRHALGDLV GIKKHYRRKH  60
SNQKQWVCER CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDSCNMGRVR  120
SELQPLQPAC LSRTASSPTP SSDTNFSATP NLPPFILPKP MENPILLLSP TKDCSSRNGQ  180
DNHHHNLELQ LSSSSIPAEA ASISSKSDEK DSTPLQLSIG SSCDAREKNE SNNVSHLMSN  240
MGDRPNSVIA ALQMREEARE QLRLAMAEKA YSEEARELAR RQIQMAEQEF ANAQRIRQQA  300
QSELDKALAL REHASKQINS AILQVTCHAC KKQFQARAVR DMANEDEKSS VLVLSYVSSV  360
VTEGEVGER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-1763115456Zinc finger protein JACKDAW
5b3h_F3e-1763115456Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036998.10.0PREDICTED: protein SHOOT GRAVITROPISM 5
SwissprotF4IPE31e-114IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A059A4G60.0A0A059A4G6_EUCGR; Uncharacterized protein
STRINGXP_010036998.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.21e-111C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]