PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054790.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 54aa    MW: 6036.98 Da    PI: 8.0858
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054790.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-05426123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  +kC+ C+ksF +   L  H+r+H
  EcC054790.30  4 HKCKLCSKSFCNGRALGGHMRSH 26
                  79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.73E-7330No hitNo description
PfamPF139122.1E-7326IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-5426IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.699431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0055114Biological Processoxidation-reduction process
GO:0003676Molecular Functionnucleic acid binding
GO:0016779Molecular Functionnucleotidyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
MERHKCKLCS KSFCNGRALG GHMRSHLVNL PLPLKPGEEE EQEPPVQLRG AETP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053941.15e-21PREDICTED: zinc finger protein ZAT9
TrEMBLA0A059CIP01e-19A0A059CIP0_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010053941.12e-20(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.11e-13C2H2-like zinc finger protein