PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054618.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 186aa    MW: 20736.4 Da    PI: 8.9919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054618.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000645072123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ C+++Fs+   L  H  +H
  EcC054618.30 50 FECKTCNRRFSSFQALGGHRASH 72
                  89**********99999998887 PP

2zf-C2H212.70.0004100122123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ Cg  F +   L  H+r+H
  EcC054618.30 100 HECSMCGLKFASGQALGGHMRRH 122
                   78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-44274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.31E-64677No hitNo description
SMARTSM003550.165072IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2635077IPR007087Zinc finger, C2H2
PfamPF139122.1E-125074IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SuperFamilySSF576675.29E-697125No hitNo description
SMARTSM003550.027100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076100127IPR007087Zinc finger, C2H2
PfamPF139124.5E-10100125IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTFSCAPTLK RTRDDCEGMS LDMAKCLMLL SHGVNTNPKK AAVHHDEDIF ECKTCNRRFS  60
SFQALGGHRA SHKKPRLLET TKLEDCTKLA LGSMAKPKMH ECSMCGLKFA SGQALGGHMR  120
RHRAELMSGD MMKMDEILAV GSMIPLLKRS NSSKRVMGLD LNLSPFENDL KFLFGKMAPE  180
IDPVFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068234.21e-129PREDICTED: zinc finger protein ZAT1
TrEMBLA0A059DDS81e-113A0A059DDS8_EUCGR; Uncharacterized protein
STRINGXP_010068234.11e-129(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-48C2H2 family protein