PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054522.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 111aa    MW: 12336.1 Da    PI: 7.8517
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054522.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.73.4e-42197298
        DUF260  2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
                  CaaCk+lrr+C +dC +apyfpa++p+kf nvhk+FGasnv k+l++lpe++r +++sslvyeA+ar+rdPv+G+vg i++lq+ql+ + ae+++l+
  EcC054522.20  1 CAACKLLRRRCMQDCLFAPYFPASEPHKFTNVHKVFGASNVNKMLQDLPEDQRANTVSSLVYEANARVRDPVNGCVGEITALQSQLADKIAEVERLQ 97
                  ****************************************************************************************999998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.9541100IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-41196IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
GO:0016757Molecular Functiontransferase activity, transferring glycosyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
CAACKLLRRR CMQDCLFAPY FPASEPHKFT NVHKVFGASN VNKMLQDLPE DQRANTVSSL  60
VYEANARVRD PVNGCVGEIT ALQSQLADKI AEVERLQVLL EAEKSNRSPS S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056712.13e-78PREDICTED: LOB domain-containing protein 4-like
RefseqXP_010058105.13e-78PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE96e-47LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A059C5K53e-78A0A059C5K5_EUCGR; Uncharacterized protein
STRINGVIT_19s0027g01120.t013e-48(Vitis vinifera)
STRINGGLYMA20G02850.13e-48(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-48LOB domain-containing protein 4